PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2417_iso_6
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 224aa    MW: 24885.3 Da    PI: 9.9554
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2417_iso_6genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.45.5e-21131180255
                                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                          y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  cra_locus_2417_iso_6_len_671_ver_3 131 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 180
                                         59******9.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.72E-34130190No hitNo description
SMARTSM003807.5E-38131194IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-23131189IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-32131189IPR001471AP2/ERF domain
PROSITE profilePS5103223.143131188IPR001471AP2/ERF domain
PRINTSPR003671.6E-11132143IPR001471AP2/ERF domain
PfamPF008471.7E-14132180IPR001471AP2/ERF domain
PRINTSPR003671.6E-11154170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0045595Biological Processregulation of cell differentiation
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
XSSSSNDQFF SFSAAPSTSS ASTSFPYNSS FYSSVQSQPN TYPDGIASFH HQALSGMDQS  60
GSVGLNHLNS SQIHDIQAQI NLQNLTQQHM LSGPFHGQWA NNHQNQAAHN FLAPRPVTMK  120
QSGSPPKPTK LYRGVRQRHW GKWVAEIRLP KNRTRLWLGT FDTAEEAALA YDKAAYKLRG  180
DFARLNFPHL RHNGSLIGGD FGEYKPLHSS VDAKLQAICQ RLAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-21130188160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00026PBMTransfer from AT1G78080Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009615540.11e-89PREDICTED: ethylene-responsive transcription factor RAP2-4-like
RefseqXP_016500912.11e-89PREDICTED: ethylene-responsive transcription factor RAP2-4-like isoform X1
RefseqXP_016500913.11e-89PREDICTED: ethylene-responsive transcription factor RAP2-4-like isoform X2
SwissprotQ8H1E45e-75RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A068TXJ11e-100A0A068TXJ1_COFCA; Uncharacterized protein
STRINGVIT_18s0001g05250.t013e-79(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16102471